Author

Farica Zhuang

University of PennsylvaniaORCID 0000-0002-6391-7225Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genetics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 3 Research Focus:differential expression· 2 Organism:human· 2 Approach:statistical model· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Yoseph BarashiD· 3 shared Alexander KanitziD· 1 shared Alli JimeneziD· 1 shared Anke BuschiD· 1 shared Asier Gonzalez‐UriarteiD· 1 shared Benoît P. NicoletiD· 1 shared Bryan B. GuzmániD· 1 shared Chelsea HerdmaniD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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3 shared papersMolecular Biology

Yoseph BarashORCID

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3 papers

Recent·Most cited

Molecular BiologybioRxivPreprintMar 3, 2026

RNA G-quadruplexes mediate cooperativity in HNRNPH binding and splicing regulation

Kerstin Tretow, Mario Keller, Mikhail V. Mesitov…·Kathi Zarnack

The paper investigates how RNA G-quadruplexes enable cooperative binding of HNRNPH and regulate splicing, showing clinical relevance in breast cancer.

DOI 10.64898/2026.03.03.709289

humanbulk RNA-seq

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GeneticsNature CommunicationsPeer-reviewedNov 20, 2025

G4mer: An RNA language model for transcriptome-wide identification of G-quadruplexes and disease variants from population-scale genetic data

Farica Zhuang, Danielle Gutman, Nathaniel Islas…·Yoseph Barash

G4mer identifies G-quadruplexes and disease variants from population-scale genetic data, improving accuracy and highlighting sequence features affecting rG4 formation.

5 citations

humanbulk RNA-seq

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BioinformaticsRNAPeer-reviewedOct 10, 2023

Extensible benchmarking of methods that identify and quantify polyadenylation sites from RNA-seq data

Sam Bryce-Smith, Dominik Bürri, Matthew R. Gazzara…·Mihaela Zavolan

The paper benchmarks eight tools for identifying and quantifying alternative polyadenylation sites from RNA-seq data using real, synthetic, and 3'-end sequencing data.

18 citations

bulk RNA-seqbenchmark study

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