Yue Chang

Evolutionary remodeling of non-canonical ORF translation in mammals

The paper identifies and characterizes non-canonical ORFs in mammals, showing their evolutionary conservation and functional integration into the proteome.

A systematic evaluation revealed that detecting translated non-canonical ORFs from ribosome profiling data remains challenging

The paper evaluates four methods for detecting translated non-canonical ORFs from Ribo-Seq data and finds they have low precision and accuracy, especially for ORFs with near-cognate start codons.

PSite: inference of read-specific P-site offsets for ribosomal footprints

PSite infers read-specific P-site offsets for ribosomal footprints, improving ORF prediction and robustness to dataset quality and cutting bias.

Initial data release and announcement of the Fish10K: Fish 10,000 Genomes Project

The paper announces the Fish10K project to sequence 10,000 fish genomes and describes a workflow for biospecimen procurement, sequencing, and assembly.

Chromosome-level genome assembly of a butterflyfish, Chelmon rostratus

This study presents the first chromosome-level genome assembly of the copperband butterflyfish, Chelmon rostratus, providing insights into genome evolution and adaptation in coral reef fish.

Chromosome level draft genomes of the fall armyworm, Spodoptera frugiperda (Lepidoptera: Noctuidae), an alien invasive pest in China

This study assembled two chromosome-scale genomes of the fall armyworm in China, revealing gene family expansions and population origins to aid in pest management.

A chromosome-level genome of black rockfish, Sebastes schlegelii, provides insights into the evolution of live birth

The paper presents a chromosome-level genome of black rockfish, identifies candidate genes related to viviparity, and proposes a reproductive model.