Andrea Riba

Single-cell multiomics reveals the oscillatory dynamics of mRNA metabolism and chromatin accessibility during the cell cycle

The paper uses single-cell multiomics to analyze mRNA metabolism and chromatin accessibility dynamics during the cell cycle, revealing oscillatory patterns and regulatory mechanisms.

Cell cycle gene regulation dynamics revealed by RNA velocity and deep-learning

The paper uses scRNA-seq and deep learning to map cell cycle gene regulation dynamics in mouse and human cells, identifying key transcription waves and transitions.

Regulation of transcription reactivation dynamics exiting mitosis

The paper develops a mathematical model to correct for cell-cycle desynchronization and identifies a core gene regulatory network and potential mitotic bookmarking factors involved in transcription reactivation post-mitosis.

Temporal specificity and heterogeneity of the fly immune cells' transcriptional landscape

The paper uses bulk and single-cell RNA sequencing to study Drosophila hemocyte heterogeneity across developmental stages and immune challenges, identifying novel cell types and functional states.