Author

Doo Yeon Kim

Harvard UniversityORCID 0000-0002-6969-0340Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 4 Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Assay:scRNA-seq· 2 Approach:benchmark study· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

Rudolph E. TanziiD· 3 shared Giulia PegoraroiD· 2 shared Isabel CastanhoiD· 2 shared Larisa M. SotoiD· 2 shared Pourya Naderi YeganehiD· 2 shared Winston HideiD· 2 shared Abhirami Kannan IyeriD· 1 shared Alex KangiD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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3 shared papersNeuroscience

Rudolph E. TanziORCID

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Author profile →

4 papers

Recent·Most cited

Genedex: Contextualizing gene signatures across Alzheimer's disease pathology, cell types, and brain regions

Giulia Pegoraro, Mehmet Enis Isgoren, Livia Rizzo, Larisa M. Soto, Pourya Naderi Yeganeh, Inyoung Sung, Sumeet Gupta, Doo Yeon Kim, Rudolph E. Tanzi, Katie Lunnon, Isabel Castanho, Winston Hide

Genedex integrates gene signatures from Alzheimer's disease studies to contextualize gene expression across pathology, cell types, and brain regions, revealing new insights into disease mechanisms.

bioRxiv · Oct 27, 2026 · PreprintNeuroscience

Design of readers for pathological PTM proteoforms in Alzheimer's disease

Kejia Wu, Tiana Schantz, Lemuel Chang, Prarthna Chabria, Elaina Bashaw, Thejesh Reddy Kalatturu, Doo Yeon Kim, An‐Qi Chen, Nathaniel Corley, Asim K. Bera, Alex Kang, Hannah Nguyen, Johnny Mendoza, Xinting Li, Magnus S. Bauer, , David A. Baker

The paper designs and validates protein readers that specifically detect disease-related modifications in Tau and Abeta in Alzheimer's disease models and human samples.

bioRxiv · Oct 21, 2026 · PreprintBioengineering

Systematic analysis of cellular crosstalk reveals a role for SEMA6D-TREM2 regulating microglial function in Alzheimer's disease

Ricardo D’Oliveira Albanus, Gina M. Finan, Logan Brase, Nicholas Sweeney, Tae Yeon Kim, Shuo Chen, Yeonsu Ryoo, Joseph Park, Qi Guo, Abhirami Kannan Iyer, Mariana Acquarone, Shih‐Feng You, Brenna C. Novotny, Emily Margaret Mace, Patrícia Pereira, , Tae-Wan Kim

The paper investigates cell-to-cell communication in Alzheimer's disease to characterize disease biology and suggest new avenues for therapeutic intervention.

Science Translational Medicine · Jul 30, 2025Peer-reviewedNeuroscience

Molecular hallmarks of excitatory and inhibitory neuronal resilience and resistance to Alzheimer's disease

Isabel Castanho, Pourya Naderi Yeganeh, Carles A. Boix, Sarah L. Morgan, Hansruedi Mathys, Dmitry Prokopenko, Bartholomew White, Larisa M. Soto, Giulia Pegoraro, Saloni A. Shah, Athanasios Ploumakis, Nikolaos Kalavros, David A. A Bennett, Christoph Lange, Doo Yeon Kim, , Winston Hide

This study identifies molecular and cellular signatures of cognitive resilience in Alzheimer's disease by integrating multi-omics data from brain tissues.

bioRxiv · Jan 13, 2025 · PreprintNeuroscience