Author

René Snajder

German Cancer Research CenterORCID 0000-0002-7318-976XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Developmental Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Organism:Drosophila· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Marc Jan BonderiD· 2 shared Adrian WolnyiD· 1 shared Adrien LégeriD· 1 shared Anna ErzbergeriD· 1 shared Anna KreshukiD· 1 shared Arnaud Regis KrebsiD· 1 shared Dimitri FabrègesiD· 1 shared Ekaterina KorotkevichiD· 1 shared

Activity by Year

2022-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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2 shared papersGenomics

Marc Jan BonderORCID

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3 papers

Recent·Most cited

Molecular co-accessibility identifies coordinated regulation between distant cis-regulatory elements

Mathias Boulanger, Kasit Chatsirisupachai, Yuliya Badayeva, René Snajder, Marc Jan Bonder, Karine Lapouge, Kim Remans, Arnaud Regis Krebs

The paper quantifies co-accessibility between cis-regulatory elements in Drosophila using single-molecule footprinting and long-read sequencing, revealing coordinated regulation across genomic distances.

Molecular Cell · Aug 12, 2026Peer-reviewedGenomics

pycoMeth: A toolbox for differential methylation testing from Nanopore methylation calls

René Snajder, Adrien Léger, Oliver Stegle, Marc Jan Bonder

pycoMeth provides a toolbox for differential methylation analysis of long-read ONT sequencing data, offering improved efficiency and performance over existing methods.

bioRxiv · Feb 16, 2022 · PreprintBioinformatics

A robust ex vivo system to study cellular dynamics underlying mouse peri-implantation development

Takafumi Ichikawa, Hui Ting Zhang, Laura Panavaite, Anna Erzberger, Dimitri Fabrèges, René Snajder, Adrian Wolny, Ekaterina Korotkevich, Nobuko Tsuchida-Straeten, Lars Hufnagel, Anna Kreshuk, Takashi Hiiragi

This paper develops an ex vivo culture system to study mouse peri-implantation development, revealing a mechano-chemical interplay between extra-embryonic and embryonic tissues.

Developmental Cell · Jan 20, 2022Peer-reviewedDevelopmental Biology