Author

Shahar Alon

Bar-Ilan UniversityORCID 0000-0002-7458-3478Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Cell Biology· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 4 Approach:experimental assay· 4 Assay:spatial transcriptomics· 4 Organism:mouse· 3 Research Focus:differential expression· 2 Organism:human· 2 Research Focus:spatial domain detection· 2 Research Focus:cell-cell communication· 1

Frequent Co-Authors

Anubhav SinhaiD· 3 shared Asmamaw T. Wassie· 3 shared Daniel GoodwiniD· 3 shared Edward S. BoydeniD· 3 shared Richie E. KohmaniD· 3 shared Adam Henry MarblestoneiD· 2 shared Andrew G. XueiD· 2 shared Atsushi Kajita· 2 shared

Activity by Year

2018-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersNeuroscience

Anubhav SinhaORCID

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4 papers

Recent·Most cited

GenomicsbioRxivPreprintSep 24, 2025

Super-resolved spatial transcriptomics reveals early hippocampal RNA localization changes in a mouse model of Alzheimer's disease

Yaara Diamant Karasik, Hadar Eger, Tal Goldberg…·Shahar Alon

DOI 10.1101/2025.09.24.678295

mousespatial transcriptomics

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NeurosciencebioRxivPreprintJul 31, 2022

Expansion Sequencing of RNA Barcoded Neurons in the Mammalian Brain: Progress and Implications for Molecularly Annotated Connectomics

Daniel Goodwin, Alex Vaughan, Daniel Leible…·Richie E. Kohman

The paper introduces ExBarSeq, a method for high-resolution multiplexing of barcodes and synaptic proteins in neurons, demonstrating its application in mouse brain tissue.

2 citations

mousespatial transcriptomics

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GenomicsSciencePeer-reviewedJan 28, 2021

Expansion Sequencing: Spatially Precise In Situ Transcriptomics in Intact Biological Systems

Shahar Alon, Daniel Goodwin, Anubhav Sinha…·Kirsty Sawicka

ExSeq enables multiplexed RNA mapping at nanoscale resolution by expanding biological specimens for in situ sequencing.

421 citationstop 1%

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Cell BiologybioRxivPreprintMar 20, 2018

Barcoded oligonucleotides ligated on RNA amplified for multiplex and parallel in-situ analyses

Eswar P. R. Iyer, Sukanya Punthambaker, Songlei Liu…·George M. Church

The paper introduces BOLORAMIS, a RT-free method for spatially-resolved, targeted in-situ RNA detection, and demonstrates its use on human iPSCs to identify spatial localization and expression heterogeneity.

DOI 10.1101/281121

humanspatial transcriptomics

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