Author

Matthew Pendleton

Oxford Nanopore Technologies (United Kingdom)ORCID 0000-0002-7465-4459Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genetics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Research Focus:genome assembly· 1 Assay:long-read sequencing· 1 Approach:statistical model· 1

Frequent Co-Authors

Eoghan Donal HarringtoniD· 2 shared Sissel JuuliD· 2 shared Aditya S. DeshpandeiD· 1 shared Anna LindstrandiD· 1 shared Carly TyeriD· 1 shared Christopher M. GrochowskiiD· 1 shared Claudia M.B. CarvalhoiD· 1 shared Dann TurneriD· 1 shared

Activity by Year

2019-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersGenetics

Eoghan Donal HarringtonORCID

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2 papers

Recent·Most cited

Break-induced replication underlies formation of inverted triplications and generates unexpected diversity in haplotype structures

Christopher M. Grochowski, Jesse D. Bengtsson, Haowei Du, Mira Gandhi, Ming Yin Lun, Michele G. Mehaffey, KyungHee Park, Wolfram Höps, Eva Benito, Patrick Hasenfeld, Jan O. Korbel, Medhat Mahmoud, Luis F. Paulin, Shalini N. Jhangiani, Donna Marie Muzny, , Claudia M.B. Carvalho

The paper investigates DUP-TRP/INV-DUP genomic rearrangements in neurodevelopmental disorders, identifying four SV haplotypes and refining template switching points using multiple sequencing technologies.

bioRxiv · Oct 2, 2023 · PreprintGenetics

Nanopore sequencing of DNA concatemers reveals higher-order features of chromatin structure

Netha Ulahannan, Matthew Pendleton, Aditya S. Deshpande, Stefan Schwenk, Julie M. Behr, Xiaoguang Dai, Carly Tyer, Priyesh Rughani, Sarah Kudman, Emily M. Adney, Huasong Tian, David C. Wilkes, Juan Miguel Mosquera, David Stoddart, Dann Turner, , Marcin B. Imielinski

Pore-C reads multi-way chromatin contacts directly off unamplified Nanopore long reads, recovering Hi-C-scale features while also resolving rearranged cancer alleles and supporting de novo assembly.

bioRxiv · Nov 7, 2019 · PreprintGenomics