Author

David Stoddart

Oxford Nanopore Technologies (United Kingdom)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 3

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Assay:whole-genome sequencing· 3 Research Focus:genome assembly· 2 Organism:human· 2 Assay:long-read sequencing· 2 Research Focus:variant calling· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1

Frequent Co-Authors

Dann TurneriD· 2 shared Aditya S. DeshpandeiD· 1 shared Andrew D. SmithiD· 1 shared Arthur WickenhageniD· 1 shared Benedict PateniD· 1 shared Carly TyeriD· 1 shared David C. WilkesiD· 1 shared David H. HaussleriD· 1 shared

Activity by Year

2018-2020 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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2 shared papersGenomics

Dann TurnerORCID

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Author profile →

3 papers

Recent·Most cited

Improvements to the ARTIC multiplex PCR method for SARS-CoV-2 genome sequencing using nanopore

John R. Tyson, Phillip L. James, David Stoddart, Natalie Sparks, Arthur Wickenhagen, Grant Hall, Ji Hyun Choi, Hope R. Lapointe, Kimia Kamelian, Andrew D. Smith, Natalie Prystajecky, Ian Goodfellow, Sam J. Wilson, Richard Harrigan, Terrance P. Snutch, , Joshua Quick

V3 primer pools with 22 extra alternates improve coverage; revised library preps raise double-barcode demultiplexing from 42.15% to 74.5%, cut misassignment 35x and bring reagent cost near £10 per sample.

bioRxiv · Sep 4, 2020 · PreprintGenomics✦ In-depth digest

Nanopore sequencing of DNA concatemers reveals higher-order features of chromatin structure

Netha Ulahannan, Matthew Pendleton, Aditya S. Deshpande, Stefan Schwenk, Julie M. Behr, Xiaoguang Dai, Carly Tyer, Priyesh Rughani, Sarah Kudman, Emily M. Adney, Huasong Tian, David C. Wilkes, Juan Miguel Mosquera, David Stoddart, Dann Turner, , Marcin B. Imielinski

Pore-C reads multi-way chromatin contacts directly off unamplified Nanopore long reads, recovering Hi-C-scale features while also resolving rearranged cancer alleles and supporting de novo assembly.

bioRxiv · Nov 7, 2019 · PreprintGenomics

Linear Assembly of a Human Y Centromere

Miten Jain, Hugh E. Olsen, Dann Turner, David Stoddart, Kira V. Bulazel, Benedict Paten, David H. Haussler, Huntington F. Willard, Mark A. Akeson, Karen H. Miga

The paper uses nanopore sequencing to assemble and characterize the centromeric region of a human Y chromosome, overcoming challenges posed by repetitive DNA.

Nature Biotechnology · Mar 19, 2018Peer-reviewedGenomics