Eva Heinz

The paper develops a rules-based classifier to predict ciprofloxacin resistance in Klebsiella pneumoniae from genotype data and demonstrates its global distribution association with quinolone consumption.

The paper investigates vertical transmission of microbiota in Aedes aegypti mosquitoes and finds that maternally transmitted bacteria influence offspring development and fitness.

This study compares cefiderocol susceptibility testing methods against genomic resistance determinants in blaNDM-producing Enterobacterales, finding discrepancies between EUCAST and CLSI breakpoints and poor method agreement.

This study examines how mosquito genetic background and associated microbiomes influence Zika virus infection outcomes in Aedes aegypti, revealing line-specific microbiome responses to viral exposure.

This study evaluates Oxford Nanopore Technology for detecting Wolbachia in Anopheles mosquitoes, finding it effective for pooled samples but not individual mosquitoes.

This study shows that mosquitoes reared in different insectaries have divergent microbiomes, influenced by environmental conditions and food sources.

The paper identifies cis-regulated genes and cis-regulatory modules in Anopheles gambiae associated with insecticide resistance using allele-specific expression and machine learning.

The paper develops a Snakemake pipeline called MINUUR to recover metagenomic data from Aedes aegypti genomic datasets, identifying bacterial MAGs and confirming known microbiome symbionts.

This study integrates whole genome sequencing and transcriptomics to identify multiple factors contributing to insecticide resistance in Anopheles coluzzii.

The paper investigates a suspected MDR K. pneumoniae outbreak using whole-genome sequencing to identify strain types and resistance genes.

The paper introduces a pipeline for genomic epidemiology using mixed samples, showing comparable results to colony picks in a nosocomial setting.

The paper presents a population structure-aware method to classify genes in a bacterial pan-genome, revealing distinct evolutionary dynamics in 7,500 E. coli genomes.

This paper curates a high-quality collection of over 10,000 E. coli and Shigella genomes to facilitate analysis of genetic diversity and lineage differences.

This study reports whole-genome sequencing and antimicrobial resistance analysis of Klebsiella pneumoniae isolates from the Caribbean, revealing carbapenem resistance and hypervirulent strains.

rPinecone defines sub-lineages in low-variant bacterial populations using phylogenetic trees to improve outbreak and endemic disease analysis.

The paper analyzes ESBL-producing Klebsiella strains to show dynamic resistance evolution and highlights that successful lineages are not necessarily the most resistant or virulent.

The paper identifies GLD-2 mediated cytoplasmic polyadenylation targets in C. elegans and shows CCF-1 as the major deadenylase for maternal mRNA silencing.