Amit Kapoor

Systematic genome analysis enables long-overdue taxonomic reorganization of genus Orthoflavivirus; potential assignment of over 50 new species

The paper proposes a genetic divergence threshold for demarcating orthoflavivirus species, identifying 25 new Euflavivirus and 33 new Fusivirus species.

Integrated analysis of protein sequence and structureredefines viral diversity and the taxonomy of the Flaviviridae

The paper redefines the taxonomy of Flaviviridae by integrating protein sequence and structure data, revealing new clades and expanding host range.

Immune determinants of pegivirus persistence, control, and cross-species infection in the laboratory mouse

This paper creates a mouse model of pegivirus infection and investigates immune mechanisms of persistence and cross-species infection.