Yuliaxis Ramayo‐Caldas

Ruminosignatures associated with methane emissions and feed efficiency across geographies and cattle breeds

This study identifies Ruminosignatures in cattle rumen microbiota linked to methane emissions and feed efficiency across breeds and geographies.

Empowering bioinformatics communities with Nextflow and nf-core

This paper discusses the adoption of Nextflow and nf-core frameworks to standardize bioinformatics pipelines, improving collaboration and interoperability across research communities.

Opportunities and limits of combining microbiome and genome data for complex trait prediction

This paper evaluates the utility of combining microbiome and genome data for complex trait prediction using simulation and variance-component analysis, finding that microbiome data improve prediction accuracy but causal effects are hard to identify.

Modeling microRNA-driven post-transcriptional regulation by using exon-intron split analysis (EISA) in pigs

The paper uses EISA to distinguish post-transcriptional regulation by miRNAs from transcriptional changes in pig tissues, identifying miRNA-target interactions in muscle and adipose tissues.

Gut eukaryotic communities in pigs: diversity, composition and host genetics contribution

This study characterizes gut eukaryotic communities in pigs and finds limited host genetic control over their diversity and composition, with some genetic variants associated with fungal diversity and Blastocystis abundance.

A RNA-seq characterization of the porcine sperm microbiome.

The paper characterizes the porcine sperm microbiome using RNA-seq, identifying bacterial phyla, potential pathogens, and antibiotic resistance genes associated with semen quality traits.