Author

Thomas F. Baumert

InsermORCID 0000-0002-8864-2168Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 1 Microbiology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Organism:human· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell signaling & trafficking· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:host-pathogen & immune response· 1

Frequent Co-Authors

Joachim LupbergeriD· 2 shared André F. RendeiroiD· 1 shared Antonio SavianoiD· 1 shared Barbora LubyováiD· 1 shared Benedikt HoferiD· 1 shared Benedikt SimbrunneriD· 1 shared Christos Satratzemis· 1 shared Dominic GrüniD· 1 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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2 shared papersMicrobiology

Joachim LupbergerORCID

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3 papers

Recent·Most cited

PML nuclear bodies orchestrate the storage and degradation of aggregated HBc in the nucleus and reduce CAM-A-induced apoptosis.

V. Janovec, Laura Heydmann, Valério Taverniti, Christos Satratzemis, Jan Weber, Barbora Lubyová, Ivan Hirsch, Joachim Lupberger, Hannah Vanrusselt, Yannick Debing, Thomas F. Baumert, Eloi Rémi Verrier

This study shows that PML nuclear bodies store and degrade aggregated HBc, reducing apoptosis caused by CAM-A.

bioRxiv · Jun 29, 2026 · PreprintMicrobiology

Transcriptomic signatures of progressive and regressive liver fibrosis and portal hypertension

Oleksandr Petrenko, Philipp Königshofer, Ksenia Brusilovskaya, Benedikt Hofer, Katharina Bareiner, Benedikt Simbrunner, Frank Jühling, Thomas F. Baumert, Joachim Lupberger, Michael A Trauner, Stefan G. Kauschke, Larissa Pfisterer, Eric Simon, André F. Rendeiro, Laura P. M. H. de Rooij, , Thomas Reiberger

The paper identifies transcriptomic signatures of progressive and regressive liver fibrosis and portal hypertension using mouse models and patient data.

iScience · Feb 20, 2024Peer-reviewedSystems Biology

A Human Liver Cell Atlas: Revealing Cell Type Heterogeneity and Adult Liver Progenitors by Single-Cell RNA-sequencing

Nadim Aizarani, Antonio Saviano, Sagar, Laurent Mailly, Sarah Durand, Josip S. Herman, Patrick Pessaux, Thomas F. Baumert, Dominic Grün

This paper constructs a human liver cell atlas using single-cell RNA-sequencing to identify new cell subtypes and progenitors, and applies it to study liver disease and engraftment.

Nature · Jul 10, 2019Peer-reviewedGenomics