Author

Toshiya Nishimura

Stanford MedicineORCID 0000-0002-8925-5944Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Toshiya Nishimura4 papers · Hokkaido University

Biology Disciplines

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Developmental Biology· 1 Evolutionary Biology· 1 Genetics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Organism:mouse· 2 Organism:rat· 2 Assay:bulk RNA-seq· 1 Research Focus:development & morphogenesis· 1 Assay:DNA methylation· 1 Research Focus:drug response / drug discovery· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Hiromitsu NakauchiiD· 3 shared Fabian Patrik SuchyiD· 2 shared Joydeep BhaduryiD· 2 shared Adam C. WilkinsoniD· 1 shared Alexander L. StarriD· 1 shared Carlos O. EsquiveliD· 1 shared Carsten T. CharlesworthiD· 1 shared Chihiro Funamoto· 1 shared

Activity by Year

2020-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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3 shared papersDevelopmental Biology

Hiromitsu NakauchiORCID

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3 papers

Recent·Most cited

TorPause: Efficient Static Organ Preservation for Transplants

Joydeep Bhadury, Tetsuya Tajima, Fabian Patrik Suchy, Hideki Masaki, Moises Rivera, Jinyu Zhang, Toshiya Nishimura, Carsten T. Charlesworth, Carlos O. Esquivel, Hiromitsu Nakauchi

TorPause is a two-component preservation method that reduces ischemia-reperfusion injury in rat liver transplants by pausing metabolism and protecting mitochondria.

bioRxiv · Oct 9, 2026 · PreprintDevelopmental Biology

Disentangling cell-intrinsic and extrinsic factors underlying evolution

Alexander L. Starr, Toshiya Nishimura, Kyomi J. Igarashi, Chihiro Funamoto, Hiromitsu Nakauchi, Hunter B. Fraser

The paper decomposes evolutionary divergence into cell-intrinsic, extrinsic, and interaction components using reciprocal rat-mouse chimeras and finds cell-intrinsic factors dominate but extrinsic factors also play a role.

Cell Genomics · May 29, 2025Peer-reviewedEvolutionary Biology

Streamlined and quantitative detection of chimerism in mouse tissue using digital PCR

Fabian Patrik Suchy, Toshiya Nishimura, Adam C. Wilkinson, Maimi Higuchi, Joydeep Bhadury, Hiromitsu Nakauchi

This paper develops a droplet digital PCR assay to quantify chimerism in mouse tissues, showing it is robust, minimally biased, and compatible with crude lysates.

bioRxiv · Nov 4, 2020 · PreprintGenetics