Author

Shaowen Jiang

Cornell UniversityORCID 0000-0002-8934-0161Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Approach:deep learning· 2 Organism:mouse· 2 Research Focus:spatial domain detection· 2 Assay:spatial transcriptomics· 2 Research Focus:cell-cell communication· 1 Assay:long-read sequencing· 1 Approach:statistical model· 1

Frequent Co-Authors

Chase HoldeneriD· 2 shared Iwijn De VlaminckiD· 2 shared Madhav MantriiD· 2 shared Peter A. SchweitzeriD· 2 shared Andrew I. FlyakiD· 1 shared Brian D. RuddiD· 1 shared Christopher VollmersiD· 1 shared Danica M. SutherlandiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 40 mutual co-author links

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2 shared papersMicrobiology

Chase HoldenerORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

High-resolution spatial transcriptomics maps viral tropism and reveals spatially organized immune modules in viral encephalitis

Chase Holdener, Shaowen Jiang, Kira A. Griswold, K. A. Kimble, Peter A. Schweitzer, Madhav Mantri, Meleana M. Hinchman, Danica M. Sutherland, John S. L. Parker, Terence S. Dermody, Iwijn De Vlaminck

This study uses high-resolution spatial transcriptomics to map viral tropism and immune responses in neonatal mouse brains infected with reovirus, revealing spatial patterns of infection and immune module organization.

bioRxiv · Aug 21, 2026 · PreprintMicrobiology

A Temporal and Spatial Atlas of Adaptive Immune Responses in the Lymph Node Following Viral Infection

Shaowen Jiang, Jahanara Freedman, Madhav Mantri, Viviana I. Maymí, Scott A. Leddon, Peter A. Schweitzer, Subash Bhandari, Chase Holdener, Ioannis Ntekas, Christopher Vollmers, Andrew I. Flyak, Deborah J. Fowell, Brian D. Rudd, Iwijn De Vlaminck

The paper introduces AIR-SPACE, a method combining spatial transcriptomics and immune receptor sequencing to map adaptive immune responses in lymph nodes post-viral infection, revealing spatial dynamics of immune cell activation and differentiation.

Proceedings of the National Academy of Sciences · Jan 26, 2026Peer-reviewedImmunology