Author

Sakshi Chavan

Allen Institute for Brain ScienceORCID 0000-0002-8964-8852Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Neuroscience· 2

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Organism:mouse· 2 Assay:bulk RNA-seq· 1 Assay:ChIP-seq· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Anish Bhaswanth ChakkaiD· 2 shared Cameron BielsteiniD· 2 shared Changkyu LeeiD· 2 shared Darren BertagnolliiD· 2 shared Jeff GoldyiD· 2 shared Jessica GloeiD· 2 shared Jessica Malloy· 2 shared Jocelin MaloneiD· 2 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersNeuroscience

Anish Bhaswanth ChakkaORCID

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2 papers

Recent·Most cited

A suite of enhancer AAVs and transgenic mouse lines for genetic access to cortical cell types

Yoav Ben‐Simon, Marcus J. Hooper, Sujatha Narayan, Tanya L. Daigle, Deepanjali Dwivedi, Sharon W. Way, Aaron Oster, David A. Stafford, John K. Mich, Michael J. Taormina, Refugio A. Martinez, Ximena Opitz-Araya, Jada R. Roth, Jason R. Alexander, Shona W. Allen, , Shea T. Ransford

The paper develops a toolkit of transgenic mouse lines and enhancer AAVs for selective targeting of cortical cell populations using transcriptomic and epigenomic data.

Cell · May 1, 2025Peer-reviewedNeuroscience

A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain

Zizhen Yao, Cindy T. J. van Velthoven, Michael Kunst, Meng Zhang, Delissa McMillen, Changkyu Lee, Won Jung, Jeff Goldy, Aliya Abdelhak, Matthew Aitken, Katherine S. Baker, Pamela M. Baker, Eliza R. Barkan, Darren Bertagnolli, Ashwin A. Bhandiwad, , Xiaowei Zhuang

This paper creates a high-resolution transcriptomic and spatial cell type atlas of the whole adult mouse brain, revealing spatial organization and transcription factor codes for cell types.

Nature · Dec 13, 2023Peer-reviewedNeuroscience