Author

João M. C. Teixeira

Utrecht UniversityORCID 0000-0002-9113-0622Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:protein structure· 4 Approach:statistical model· 3 Approach:experimental assay· 2 Organism:human· 2 Research Focus:protein structure prediction· 2 Research Focus:software / tool· 2 Research Focus:benchmarking· 1 Organism:multiple species· 1

Frequent Co-Authors

Alexandre M. J. J. BonviniD· 3 shared Anna EngeliD· 2 shared Brian Jiménez‐GarcíaiD· 2 shared João RodriguesiD· 2 shared Marco GiuliniiD· 2 shared Rodrigo V. HonoratoiD· 2 shared Victor ReysiD· 2 shared Xiaotong XuiD· 2 shared

Activity by Year

2018-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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3 shared papersBioinformatics

Alexandre M. J. J. BonvinORCID

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Author profile →

4 papers

Recent·Most cited

HADDOCK3: A modular and versatile platform for integrative modelling of biomolecular complexes

Marco Giulini, Victor Reys, João M. C. Teixeira, Brian Jiménez‐García, Rodrigo V. Honorato, Anna Kravchenko, Xiaotong Xu, Raphaëlle Versini, Anna Engel, Stefan Verhoeven, Alexandre M. J. J. Bonvin

HADDOCK3 is a new modular platform for integrative biomolecular complex modelling, offering enhanced flexibility and integration with third-party tools to complement machine learning predictions.

Journal of Chemical Information and Modeling · Jun 17, 2025Peer-reviewedBioinformatics

Integrative modeling in the age of machine learning: a summary of HADDOCK strategies in CAPRI rounds 47-55

Victor Reys, Marco Giulini, Vlad Cojocaru, Anna Engel, Xiaotong Xu, Jorge Roel‐Touris, Cunliang Geng, Francesco Ambrosetti, Brian Jiménez‐García, Zuzana Jandová, Panagiotis I. Koukos, Charlotte W. van Noort, João M. C. Teixeira, Siri Camee van Keulen, Manon F. Réau, , Alexandre M. J. J. Bonvin

The paper summarizes HADDOCK's performance in CAPRI rounds 47-55, highlighting the effectiveness of integrating HADDOCK with AI-driven methods like AlphaFold2 for protein complex structure prediction.

Proteins Structure Function and Bioinformatics · Dec 30, 2024Peer-reviewedBioinformatics

Insights on cross-species transmission of SARS-CoV-2 from structural modeling

João Rodrigues, Susana Barrera-Vilarmau, João M. C. Teixeira, Marija Sorokina, Elizabeth Seckel, Panagiotis L. Kastritis, Michael Levitt

This study uses structural modeling to analyze ACE2 orthologs and their interactions with SARS-CoV-2 spike protein, identifying mutations that affect susceptibility and suggesting therapeutic applications.

PLoS Computational Biology · Dec 3, 2020Peer-reviewedBioinformatics

pdb-tools: a swiss army knife for molecular structures

João Rodrigues, João M. C. Teixeira, Mikael E. Trellet, Alexandre M. J. J. Bonvin

pdb-tools provides command-line Python scripts for editing, converting, and validating PDB files without external dependencies.

F1000Research · Dec 20, 2018Peer-reviewedBioinformatics