Author
Utrecht UniversityORCID 0000-0001-6995-8389Unclaimed ORCID profile · follow to get notified of new preprints
Mutual co-authors in cluster
6 papers
Recent·Most cited
Victor Reys, Marco Giulini, Vlad Cojocaru…·Alexandre M. J. J. Bonvin
The paper summarizes HADDOCK's performance in CAPRI rounds 47-55, highlighting the effectiveness of integrating HADDOCK with AI-driven methods like AlphaFold2 for protein complex structure prediction.
Stephen W. Evans, Dongqing Shi, Mariya Chavarha…·Michael Z. Lin
This paper introduces positively tuned GEVIs that enhance spike detection in vivo with standard imaging systems, offering higher temporal resolution than calcium indicators.
Siri Camee van Keulen, Alexandre M. J. J. Bonvin
The paper applies DisVis to filter co-evolution predicted contacts for protein complexes, showing it improves low-quality data but HADDOCK remains robust to false positives.
Tim Neijenhuis, Siri Camee van Keulen, Alexandre M. J. J. Bonvin
The paper presents a refinement method using HADDOCK2.4 to reduce atomic clashes in low-to-medium resolution cryo-EM complexes by optimizing protein-protein interfaces.
Vicky Charitou, Siri Camee van Keulen, Alexandre M. J. J. Bonvin
This paper presents a protocol for modeling cyclic peptides and their interactions with proteins using HADDOCK2.4, achieving 100% success rate in predicting acceptable models for a dataset of 30 complexes.
Neil J. Bruce, Daniele Narzi, Daniel Trpevski…·Jeanette Hellgren Kotaleski
The paper uses simulations to show that the inactive ternary complex of AC5, Golf, and Gi enables synergistic cAMP production in response to coincident neuromodulatory signals.