Author

Milan Avila Clasen

Instituto Carlos ChagasORCID 0000-0002-9118-7581Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Assay:proteomics· 2 Approach:benchmark study· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

Diogo Borges LimaiD· 2 shared Fabio Cesar GozzoiD· 2 shared Fan LiuiD· 2 shared Julia RutaiD· 2 shared Paulo C. CarvalhoiD· 2 shared Albert J.R. Heck· 1 shared Andrew KelleriD· 1 shared B.C. do AmaraliD· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

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2 shared papersBioinformatics

Diogo Borges LimaORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintApr 27, 2025

A community audit of error control in crosslinking mass spectrometry

Lutz Fischer, B.C. do Amaral, Micha Johannes Birklbauer…·Juri Rappsilber

The paper audits error control in twelve crosslinking mass spectrometry pipelines using ground-truth designs, finding some pipelines exceed false discovery rates by up to 29-fold.

1 citation

proteomicsexperimental assay

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BioinformaticsNature MethodsPeer-reviewedOct 31, 2024

PROTEOME-SCALE RECOMBINANT STANDARDS AND A ROBUST HIGH-SPEED SEARCH ENGINE TO ADVANCE CROSS-LINKING MS-BASED INTERACTOMICS

Milan Avila Clasen, Max Ruwolt, Cong Wang…·Fan Liu

The paper develops recombinant protein standards and a search engine for XL-MS, showing Scout outperforms existing tools in speed, sensitivity, and false-discovery rate control.

46 citationstop 2%

proteomicsstatistical model

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