A community audit of error control in crosslinking mass spectrometry
Lutz Fischer, B.C. do Amaral, Micha Johannes Birklbauer, James E. Bruce, Paulo C. Carvalho, Robert J. Chalkley, Milan Avila Clasen, Viktoria Dorfer, Fabio Cesar Gozzo, Albert J.R. Heck, Michael R. Hoopmann, Claudio Iacobucci, Andrew Keller, Lars Kolbowski, Swantje Lenz, , Juri Rappsilber
The paper audits error control in twelve crosslinking mass spectrometry pipelines using ground-truth designs, finding some pipelines exceed false discovery rates by up to 29-fold.
bioRxiv · Apr 27, 2025 · PreprintBioinformatics