Author

Ariana Kupai

Van Andel InstituteORCID 0000-0002-9223-7624Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Molecular Biology· 2 Developmental Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Organism:mouse· 1

Frequent Co-Authors

Scott B. RothbartiD· 2 shared Abhishek Vijay ThakkariD· 1 shared Adam W. T. SteffeckiD· 1 shared Amber R. Willbanks· 1 shared Bradley M. DicksoniD· 1 shared Clara Bien PeekiD· 1 shared Colleen R. ReczekiD· 1 shared Eric M. Pfrender· 1 shared

Activity by Year

2023-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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2 shared papersMolecular Biology

Scott B. RothbartORCID

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3 papers

Recent·Most cited

Immunomodulatory Role of the Stem Cell Circadian Clock in Muscle Repair

Pei Zhu, Eric M. Pfrender, Adam W. T. Steffeck, Colleen R. Reczek, Yalu Zhou, Abhishek Vijay Thakkar, Neha R. Gupta, Ariana Kupai, Amber R. Willbanks, Richard L. Lieber, Ishan Roy, Navdeep S. Chandel, Clara Bien Peek

This study shows that the circadian clock in muscle stem cells modulates immune responses and inflammation during muscle regeneration through NAD+ metabolism and CCL2 signaling.

Science Advances · Mar 5, 2025Peer-reviewedDevelopmental Biology

Mitotic chromatin marking governs asymmetric segregation of DNA damage

Juliette Ferrand, Juliette Dabin, Odile Chevallier, Matteo Kane-Charvin, Ariana Kupai, Joel A. Hrit, Scott B. Rothbart, Sophie E. Polo

This study identifies a mitotic chromatin-marking pathway that controls the asymmetric segregation of UV-induced DNA damage in human cells.

bioRxiv · Sep 4, 2023 · PreprintMolecular Biology

Analysis of histone antibody specificity directly in sequencing data using siQ-ChIP

Ariana Kupai, Robert M. Vaughan, Scott B. Rothbart, Bradley M. Dickson

This paper introduces siQ-ChIP, a method to generate quantitative ChIP-seq data without spike-in normalization and shows how antibody specificity can be analyzed directly in ChIP-seq experiments.

bioRxiv · Mar 8, 2023 · PreprintMolecular Biology