Author

Aaron D. Hernday

University of California, MercedORCID 0000-0002-9351-7150Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Microbiology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Organism:C. elegans· 2 Assay:bulk RNA-seq· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Approach:statistical model· 1 Organism:yeast· 1

Frequent Co-Authors

Clarissa J. NobileiD· 2 shared Ana SubotićiD· 1 shared Celia Lobo Romero· 1 shared Craig L. EnnisiD· 1 shared Dimitrios SofrasiD· 1 shared Hans CarolusiD· 1 shared Jeffrey M. RybakiD· 1 shared Jordan C. RozumiD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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2 shared papersMicrobiology

Clarissa J. NobileORCID

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2 papers

Recent·Most cited

A comparative evaluation of CRISPR-Cas9 allele editing systems in Candida auris: challenging research in a challenging bug

Dimitrios Sofras, Hans Carolus, Ana Subotić, Celia Lobo Romero, Craig L. Ennis, Aaron D. Hernday, Clarissa J. Nobile, Jeffrey M. Rybak, Patrick Van Dijck

This study compares four CRISPR-Cas9 systems for genome editing in Candida auris, finding significant differences in efficiency and integration patterns.

bioRxiv · Jan 9, 2025 · PreprintMicrobiology

Inferring gene regulatory networks using transcriptional profiles as dynamical attractors

Ruihao Li, Jordan C. Rozum, Morgan M. Quail, Mohammad N. Qasim, Suzanne Sindi, Clarissa J. Nobile, Réka Albert, Aaron D. Hernday

This paper develops an ODE-based GRN inference method using dynamic transcriptional data and validates it on synthetic yeast and Candida albicans GRNs.

PLoS Computational Biology · Aug 22, 2023Peer-reviewedSystems Biology