Maria Vlasenok

The paper develops a framework to correct splicing metric estimation for NMD-sensitive transcripts using statistical models and linear fractional transformations.

The paper identifies NMD escape through alternative intronic polyadenylation by analyzing GTEx data and demonstrates tissue-specific isoform switches in several genes.

The paper investigates how HSF1 binding patterns remain consistent across different heat shock stimuli in cancer cells and links these patterns to transcription outcomes and chromatin accessibility changes.

RNAcontacts detects RNA-RNA contacts from proximity ligation assays using a two-pass alignment approach to improve sensitivity and specificity.

The paper identifies tissue-specific unproductive splicing events (USEs) regulated by RBPs using RNA-seq and RBP footprinting data from GTEx.

The paper identifies intronic polyadenylation sites and shows they are more common than exonic ones, suggesting splicing counteracts premature termination at these sites.