Author

Joaquim Ollé-López

University of CopenhagenORCID 0000-0003-1150-3896Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:ChIP-seq· 2 Research Focus:gene regulatory network inference· 2 Research Focus:benchmarking· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Assay:Hi-C· 1

Frequent Co-Authors

Nils KrietensteiniD· 2 shared Alexander van OudenaardeniD· 1 shared Anja GrothiD· 1 shared Anton Lunow Bournonville· 1 shared Arnor Ingi SigurdssoniD· 1 shared Chunaram ChoudharyiD· 1 shared Hannah J. RichteriD· 1 shared Jeroen van den BergiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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2 shared papersMolecular Biology

Nils KrietensteinORCID

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2 papers

Recent·Most cited

Molecular BiologybioRxivPreprintFeb 26, 2026

Unified function of FACT in mammalian chromatin replication and transcription, dissolving and restoring nucleosomes to counteract genome aggregation

R. Frater, Rikke Rejnholdt Jensen, Joaquim Ollé-López…·Anja Groth

This study shows that FACT is essential for chromatin replication and transcription by disrupting and reassembling nucleosomes, preventing genome aggregation.

DOI 10.64898/2026.02.25.707725

mouseChIP-seq

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BioinformaticsGenome biologyPeer-reviewedFeb 14, 2026

Modeling nascent transcription from chromatin landscape and structure

Marc Pielies Avelli, Arnor Ingi Sigurdsson, Joaquim Ollé-López…·Simon Rasmussen

The paper introduces CLASTER, a deep learning model that predicts nascent transcription levels from chromatin landscape and 3D structure data, achieving high correlation with experimental measurements.

DOI 10.1186/s13059-026-03992-5

ChIP-seqHi-C

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