Vladimir Sentchilo

The paper develops a mathematical framework to predict microbial community assembly using monoculture growth kinetics and inferred species interactions, revealing biphasic community development driven by competition and cross-feeding.

This study examines microbial community stability and variability in water kefir, finding species-level stability but plasmid and phage diversity across generations and households.

The paper investigates how microbiota origin affects transplant outcomes in soil, finding that habitat filtering, not origin, determines success.

This study shows that bacterial inoculants in soil microbiomes are influenced by niche availability and competitive facilitation, with selective niches improving their proliferation.

The paper integrates genome-scale metabolic modeling with transcriptomics and exometabolomics to predict bacterial metabolic responses and validate them experimentally in Pseudomonas veronii.

The paper computationally redesigns the Escherichia coli RbsB ribose-binding protein to recognize non-natural ligands 1,3-cyclohexanediol and cyclohexanol, achieving partial success with some mutants showing ligand-specific induction.