Author

Taneli Pusa

Åbo Akademi UniversityORCID 0000-0003-2183-8876Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Research Focus:benchmarking· 1 Organism:human· 1 Assay:metabolomics· 1 Assay:proteomics· 1

Frequent Co-Authors

Alberto NoronhaiD· 1 shared Andrea GuarracinoiD· 1 shared Andreas J GruberiD· 1 shared Avantika LaliD· 1 shared Brett E PickettiD· 1 shared Christophe TrefoisiD· 1 shared Daniel Siqueira de OliveiraiD· 1 shared Ethan Beausoleil· 1 shared

Activity by Year

2021-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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1 shared paperSystems Biology

Alberto NoronhaORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintJun 3, 2026

ROTS 2.0: A reproducibility-driven framework for robust statistical modeling across diverse high-throughput omics study designs

Tomi Suomi, Jalmari Kettunen, Taneli Pusa, Laura L. Elo

ROTS 2.0 improves statistical modeling in omics studies by optimizing reproducibility across various experimental designs and provides open-source implementations in R and Python.

DOI 10.64898/2026.06.01.729164

proteomicsbulk RNA-seq

𝕏 PostBluesky

Systems BiologyBioinformaticsPeer-reviewedNov 10, 2021

COBREXA.jl: constraint-based reconstruction and exascale analysis

Miroslav Kratochvíl, Laurent Heirendt, St. Elmo Wilken…·Wei Gu

COBREXA.jl is a Julia package for scalable constraint-based metabolic modeling, designed for high-performance computing environments and multi-organism community models.

12 citations

metabolomicsstatistical model

𝕏 PostBluesky

BioinformaticsCommunications BiologyPeer-reviewedMay 17, 2021

Genome-wide bioinformatic analyses predict key host and viral factors in SARS-CoV-2 pathogenesis

Mariana Galvão Ferrarini, Avantika Lal, Rita Rebollo…·Vanessa Aguiar‐Pulido

The paper uses bioinformatic analyses of RNA sequencing data to identify host and viral factors involved in SARS-CoV-2 pathogenesis, including differentially expressed genes and viral sequence variants linked to disease severity.

48 citations

humanbulk RNA-seq

𝕏 PostBluesky