Author

Amin Allahyar

Utrecht UniversityORCID 0000-0003-2567-0273Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genetics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Assay:ChIP-seq· 1

Frequent Co-Authors

Elzo de WitiD· 2 shared Jeroen de RidderiD· 2 shared Marjon J.A.M. Verstegen· 2 shared Peter H.L. KrijgeriD· 2 shared Wouter L. de LaatiD· 2 shared Benjamin D. RowlandiD· 1 shared Britta A. M. BouwmaniD· 1 shared Carlo VermeuleniD· 1 shared

Activity by Year

2018-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersGenomics

Elzo de WitORCID

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3 papers

Recent·Most cited

GenomicsbioRxivPreprintJan 4, 2023

Detailed in vivo characterization of the players and impact of individual loop extrusion trajectories

Ruiqi Han, Yike Huang, Michelle Robers…·Peter H.L. Krijger

This study uses TACL to analyze individual cohesin loop extrusion trajectories in vivo, revealing new roles for cohesin subunits and their interactions with CTCF and chromatin structure.

6 citations

humanChIP-seq

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BioinformaticsPLoS Computational BiologyPeer-reviewedFeb 6, 2019

A data-driven interactome of synergistic genes improves network based cancer outcome prediction

Amin Allahyar, Joske Ubels, Jeroen de Ridder

This paper introduces SyNet, a data-driven gene network derived from synergistic gene pairs that improves cancer outcome prediction compared to existing networks.

23 citations

humanbulk RNA-seq

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GeneticsNature GeneticsPeer-reviewedJul 6, 2018

Locus-Specific Enhancer Hubs And Architectural Loop Collisions Uncovered From Single Allele DNA Topologies

Amin Allahyar, Carlo Vermeulen, Britta A. M. Bouwman…·Wouter L. de Laat

The paper introduces a new 3C method, MC-4C, to study multi-way DNA conformations and reveals cooperative and competitive chromatin interactions, including enhancer hubs and loop collisions.

227 citationstop 1%

Hi-Cexperimental assay

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