Author

Shota Yamashita

Tohoku UniversityORCID 0000-0003-3203-8655Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:cell type annotation· 2 Approach:deep learning· 2 Organism:human· 2 Approach:statistical model· 2 Research Focus:cancer & tumor microenvironment· 1 Research Focus:cell signaling & trafficking· 1 Research Focus:chromatin & epigenetic regulation· 1

Frequent Co-Authors

Daisuke AndoiD· 2 shared Hidenori EndoiD· 2 shared Kuniyasu NiizumaiD· 2 shared Masayuki KanamoriiD· 2 shared Sherif RashadiD· 2 shared Yoshiteru ShimodaiD· 2 shared Abdulrahman MousaiD· 1 shared Arata NagaiiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersCancer Biology

Daisuke AndoORCID

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2 papers

Recent·Most cited

Cancer BiologybioRxivPreprintJul 14, 2026

Long read multi-omics sequencing reveals DNA-to-RNA evolutionary remodeling trajectories of recurrent astrocytoma

Sherif Rashad, Daisuke Ando, Shota Yamashita…·Kuniyasu Niizuma

This study uses long-read multi-omics sequencing to analyze DNA-to-RNA remodeling in recurrent astrocytoma, identifying patient-specific genetic and epigenetic changes and their impact on RNA isoforms and protein fate.

DOI 10.64898/2026.07.12.738108

humanwhole-genome sequencing

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Cancer BiologybioRxivPreprintNov 28, 2025

ALKBH1 drives codon-biased, pro-oncogenic translation and tumor microenvironment remodeling in glioma via tRNA wobble oxidation

Atsushi Nakayashiki, Arata Nagai, Yuko Iwasaki…·Kuniyasu Niizuma

This study identifies ALKBH1 as a driver of codon-biased translation and tumor microenvironment remodeling in glioma, promoting stemness and immune evasion.

DOI 10.1101/2025.11.28.691056

humanbulk RNA-seq

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