Patrick Hellwig

Creating microbiome-model harmony between metaproteomics data and the ADM1da for a two-step anaerobic digester

This paper improves anaerobic digestion models by integrating metaproteomics data to better represent microbial functions and dynamics in a two-step digester system.

A metaproteomics-based meta study of samples from patients with inflammatory bowel disease identifies potential markers for diagnosis and therapy monitoring

This study identifies potential biomarkers for IBD diagnosis and monitoring through metaproteomics meta-analysis of over 600 samples.

A roadmap for fair reuse of public microbiome data

The paper proposes a roadmap for fair reuse of public microbiome data by introducing a Data Reuse Information tag (DRI) to facilitate communication between data creators and consumers.

Quantitative analysis of proteomic changes in monoclonal MDCK cell lines infected with human influenza A virus

The paper compares proteomic changes in two monoclonal MDCK cell lines infected with influenza A virus to identify factors associated with high viral yield.

Detection, isolation and characterisation of phage-host complexes using BONCAT and click chemistry

This paper develops a workflow using BONCAT and click chemistry to detect and isolate phage-host complexes, validated with E. coli and lambda phage.

Tracing active members in microbial communities by BONCAT and click chemistry-based enrichment of newly synthesised proteins

The paper develops a workflow to enrich newly synthesized proteins in microbial communities using BONCAT and click chemistry, demonstrating its application in tracing microbial activity.