Dirk Benndorf

This paper improves anaerobic digestion models by integrating metaproteomics data to better represent microbial functions and dynamics in a two-step digester system.

CAMPI-2 evaluates five fecal sample stabilization methods for metaproteomics, finding one commercial device offers the best reproducibility and stability during room-temperature storage.

This study identifies potential biomarkers for IBD diagnosis and monitoring through metaproteomics meta-analysis of over 600 samples.

The paper compares proteomic changes in two monoclonal MDCK cell lines infected with influenza A virus to identify factors associated with high viral yield.

This paper develops a workflow using BONCAT and click chemistry to detect and isolate phage-host complexes, validated with E. coli and lambda phage.

The paper develops a workflow to enrich newly synthesized proteins in microbial communities using BONCAT and click chemistry, demonstrating its application in tracing microbial activity.

Pout2Prot converts Percolator output files into protein group files compatible with Prophane, using weighted spectral counts and multiple grouping strategies.

The paper introduces a user-friendly web tool for assigning microbial community data to metabolic pathways, enabling pathway creation and automated data mapping.

smORFer detects small ORFs in prokaryotes using a modular algorithm that integrates structural features and Fourier transform for accurate identification.