Author

Kathleen Lindahl Pfaff

Dana-Farber Cancer InstituteORCID 0000-0003-3311-5384Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Cancer Biology· 2 Bioinformatics· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Organism:human· 4 Research Focus:cell type annotation· 3 Approach:experimental assay· 2 Assay:imaging· 2 Assay:spatial transcriptomics· 2 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1

Frequent Co-Authors

Scott J. RodigiD· 3 shared Åsa SegerstolpeiD· 2 shared Aviv RegeviD· 2 shared Fei CheniD· 2 shared Irving BarreraiD· 2 shared Jingyi WuiD· 2 shared Judit Jané‐ValbuenaiD· 2 shared Julia WaldmaniD· 2 shared

Activity by Year

2023-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersCancer Biology

Scott J. RodigORCID

Mutual co-authors in cluster

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4 papers

Recent·Most cited

Cancer BiologyCellPeer-reviewedOct 17, 2025

Craters on the melanoma surface facilitate tumor-immune interactions and demonstrate pathologic response to checkpoint blockade in humans

Aya Ludin, Georgia L. Stirtz, Asaf Tal…·Leonard Ira Zon

The paper identifies crater-shaped structures in melanoma that enhance immune response to checkpoint blockade therapy in humans and zebrafish.

22 citationstop 1%

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Cancer BiologybioRxivPreprintJan 7, 2024

A spatial cell atlas of neuroblastoma reveals developmental, epigenetic and spatial axis of tumor heterogeneity

Anand G. Patel, Orr Ashenberg, Natalie Bucheimer Collins…·Michael A. Dyer

This paper creates a spatial cell atlas of neuroblastoma, revealing tumor heterogeneity through multi-omics data and identifying spatial compartmentalization and signaling patterns.

39 citations

𝕏 PostBluesky

NeuroscienceeLifePeer-reviewedApr 12, 2023

An automated high-content synaptic phenotyping platform in human neurons and astrocytes reveals a role for BET proteins in synapse assembly

Martin H. Berryer, Gizem Rizki, Anna J. Nathanson…·Lindy E. Barrett

The paper develops an automated high-content synaptic phenotyping platform in human neurons and astrocytes, identifying BET inhibitors as key regulators of synapse assembly.

12 citations

humanproteomics

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BioinformaticsbioRxivPreprintMar 21, 2023

Inference of single cell profiles from histology stains with the Single-Cell omics from Histology Analysis Framework (SCHAF)

Charles S. Comiter, Xingjian Chen, Eeshit Dhaval Vaishnav…·Aviv Regev

SCHAF generates spatially resolved single-cell transcriptomes from H&E histology images using vision transformers and adversarial learning, showing good agreement with ground-truth data.

34 citations

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