Steven J.M. Jones

CancerMine compiles text-mined cancer gene annotations and provides a resource for gene-centric cancer type clustering validated against TCGA data.

ntEdit is a genome polishing tool that efficiently corrects base errors in genomic sequences across various species and coverage levels.

The paper identifies genetic markers distinguishing Chardonnay clones and reveals inbreeding between its parent species, Gouais blanc and Pinot noir.

Tigmint corrects genome assembly errors using linked reads from long molecules, improving assembly contiguity and reducing misassemblies.

This study identifies somatic coding and regulatory variants in DLBCL, revealing novel mechanisms of oncogene deregulation and potential therapeutic targets.

This study shows Sgs1 and BLM helicases prevent R-loop induced genome instability in yeast and human cells by reducing R-loop accumulation and mitigating replication-transcription collisions.

The paper quantifies gene-drug interactions in yeast using mutation rate and fitness, identifying synthetic hypermutation cases and revealing a translesion synthesis mechanism.