Author

Gregory Humphrey

University of California San DiegoORCID 0000-0003-3930-1663Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Systems Biology· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:drug response / drug discovery· 1 Organism:E. coli· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Assay:metabolomics· 1

Frequent Co-Authors

Rob D. KnightiD· 2 shared Abigail J. JohnsoniD· 1 shared Adam M. FeistiD· 1 shared Alan K. JarmuschiD· 1 shared Anupriya TripathiiD· 1 shared Austin D.-E. SwaffordiD· 1 shared B.J. BradfordiD· 1 shared Brigid Sweeney BolandiD· 1 shared

Activity by Year

2019-2020 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersSystems Biology

Rob D. KnightORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Reference data based insights expand understanding of human metabolomes

Julia M. Gauglitz, Wout Bittremieux, Candace Lareine Williams, Kelly C. Weldon, Morgan W. Panitchpakdi, Francesca Di Ottavio, Christine M. Aceves, Elizabeth Brown, Nicole C. Sikora, Alan K. Jarmusch, Cameron Martino, Anupriya Tripathi, Erfan Sayyari, Justin P. Shaffer, Roxana Coras, , Pieter C. Dorrestein

This paper expands the interpretability of human metabolomes by using food-based annotations, increasing the fraction of molecular features understood 7-fold.

bioRxiv · Jul 8, 2020 · PreprintSystems Biology

Model-driven design and evolution of non-trivial synthetic syntrophic pairs

Colton J. Lloyd, Zachary A. King, Troy E. Sandberg, Ying Hefner, Connor A. Olson, Patrick V. Phaneuf, Edward J. O’Brien, Jon G. Sanders, Rodolfo A. Salido, Karenina Sanders, Caitriona Brennan, Gregory Humphrey, Rob D. Knight, Adam M. Feist

This paper designs and evolves synthetic syntrophic E. coli pairs using a novel algorithm, revealing metabolic changes that enhance community fitness and guide co-culture optimization.

PLoS Computational Biology · Mar 1, 2019Peer-reviewedSystems Biology