Author

Yusuke Sasaki

Lawrence Berkeley National LaboratoryORCID 0000-0003-4208-5965Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Assay:bulk RNA-seq· 1 Organism:C. elegans· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Assay:GWAS summary statistics· 1 Approach:machine learning (classical)· 1 Approach:statistical model· 1

Frequent Co-Authors

Aindrila MukhopadhyayiD· 1 shared Andrei Stecca SteindorffiD· 1 shared Aparajitha SrinivasaniD· 1 shared Asun M. Oka· 1 shared Blake Alexander SimmonsiD· 1 shared Bruce S. DieniD· 1 shared Chris Todd HittingeriD· 1 shared Chu-I Yang· 1 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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1 shared paperSystems Biology

Aindrila MukhopadhyayORCID

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2 papers

Recent·Most cited

GenomicsbioRxivPreprintAug 29, 2025

MAESTRO uncovers tandem paralog dynamics as a core driver of fungal stress adaptation

Ping-Hung Hsieh, Yusuke Sasaki, Chu-I Yang…·Yasuo Yoshikuni

MAESTRO identifies tandem paralog copy number variation as a key mechanism for stress adaptation in Pichia kudriavzevii, linking it to drug resistance and environmental tolerance.

3 citations

yeastGWAS summary statistics

𝕏 PostBluesky

Systems BiologyFrontiers in Bioengineering and BiotechnologyPeer-reviewedNov 18, 2021

Genomics Characterization of an Engineered Corynebacterium glutamicum in Bioreactor Cultivation under Ionic Liquid Stress

Deepanwita Banerjee, Thomas Eng, Yusuke Sasaki…·Aindrila Mukhopadhyay

The paper resequences and analyzes transcriptomic changes in an engineered C. glutamicum strain under bioreactor conditions with and without ionic liquid stress.

8 citations

C. elegansbulk RNA-seq

𝕏 PostBluesky