Author

Asun M. Oka

Lawrence Berkeley National Laboratory

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Synthetic Biology· 2 Systems Biology· 1

Signature Assays, Organisms & Methods

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Organism:C. elegans· 2 Approach:experimental assay· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Aindrila MukhopadhyayiD· 2 shared Aparajitha SrinivasaniD· 2 shared Blake Alexander SimmonsiD· 2 shared Deepanwita BanerjeeiD· 2 shared Ning SuniD· 2 shared Thomas EngiD· 2 shared Allison N. PearsoniD· 1 shared Aymerick EudesiD· 1 shared

Activity by Year

2021-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 34 mutual co-author links

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2 shared papersSynthetic Biology

Aindrila MukhopadhyayORCID

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Author profile →

3 papers

Recent·Most cited

Sustainable production of 2,3,5,6-Tetramethylpyrazine at high titer in engineered Corynebacterium glutamicum using statistical design of experiments

Aparajitha Srinivasan, Kevin Chen-Xiao, Deepanwita Banerjee, Asun M. Oka, Venkataramana R. Pidatala, Aymerick Eudes, Blake Alexander Simmons, Thomas Eng, Aindrila Mukhopadhyay

This paper engineers Corynebacterium glutamicum to produce 2,3,5,6-tetramethylpyrazine (TMP) at high titer using statistical design of experiments to optimize media composition.

Journal of Industrial Microbiology & Biotechnology · Jan 1, 2024Peer-reviewedSynthetic Biology

Engineering Pseudomonas putida KT2440 for chain length tailored free fatty acid and oleochemical production

Luis E. Valencia, Matthew R. Incha, Matthias Schmidt, Allison N. Pearson, Mitchell G. Thompson, Jacob B. Roberts, Marina Mehling, Kevin Yin, Ning Sun, Asun M. Oka, Patrick M. Shih, Lars M. Blank, John M. Gladden, Jay D. Keasling

This paper engineers Pseudomonas putida KT2440 to produce medium- and long-chain free fatty acids and oleochemicals, achieving titers up to 670 mg/L.

Communications Biology · Dec 12, 2022Peer-reviewedSynthetic Biology

Genomics Characterization of an Engineered Corynebacterium glutamicum in Bioreactor Cultivation under Ionic Liquid Stress

Deepanwita Banerjee, Thomas Eng, Yusuke Sasaki, Aparajitha Srinivasan, Asun M. Oka, Robin A. Herbert, Jessica Trinh, Vasanth R. Singan, Ning Sun, Daniel H. Putnam, Corinne D. Scown, Blake Alexander Simmons, Aindrila Mukhopadhyay

The paper resequences and analyzes transcriptomic changes in an engineered C. glutamicum strain under bioreactor conditions with and without ionic liquid stress.

Frontiers in Bioengineering and Biotechnology · Nov 18, 2021Peer-reviewedSystems Biology