Author

Miranda Song

University of California San DiegoORCID 0000-0003-4448-277XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Genetics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Organism:human· 1 Research Focus:phylogenetics / evolution· 1 Approach:simulation· 1 Research Focus:variant calling· 1 Organism:yeast· 1

Frequent Co-Authors

Niema MoshiriiD· 2 shared Amanda K. LukensiD· 1 shared Andrea L. Cheung· 1 shared Case W. McNamaraiD· 1 shared Dyann F. WirthiD· 1 shared Eddy Vigil· 1 shared Elizabeth A. WinzeleriD· 1 shared Emmanuelle V. LeBlanciD· 1 shared

Activity by Year

2020-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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2 shared papersBioinformatics

Niema MoshiriORCID

Author profile →

3 papers

Recent·Most cited

BioinformaticsBMC Medical Informatics and Decision MakingPeer-reviewedJun 3, 2021

SEPIA: Simulation-based Evaluation of Prioritization Algorithms

Kimberly Almaraz, Tyler Jang, McKenna Lewis…·Niema Moshiri

SEPIA evaluates prioritization algorithms for HIV transmission risk using simulations, finding ProACT slightly outperforms a distance-based method but both are only marginally better than random.

1 citation

simulationbenchmarking

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GeneticsbioRxivPreprintFeb 17, 2021

Defining the Yeast Resistome through in vitro Evolution and Whole Genome Sequencing

Sabine Ottilie, Madeline R. Luth, Erich Hellemann…·Elizabeth A. Winzeler

The paper identifies genetic determinants of chemical resistance in yeast using in vitro evolution and whole genome sequencing, revealing key transcription factors involved in drug resistance.

4 citations

yeastwhole-genome sequencing

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BioinformaticsbioRxivPreprintJun 20, 2020

An Analysis of SARS-CoV-2 Using ViReport

Miranda Song, Niema Moshiri

This study analyzes over 4,000 SARS-CoV-2 genomes using ViReport to generate molecular epidemiological reports and track viral evolution.

2 citations

humanwhole-genome sequencing

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