Felix Kallenborn

QutRNA2 improves tRNA modification detection using Nanopore sequencing with GPU acceleration, achieving faster performance and identifying modifications in human and mouse tRNAs.

Accelign accelerates pairwise sequence alignment using GPUs, achieving significant speedups over existing CPU and GPU implementations for DNA, RNA, and protein sequences.

The paper accelerates protein structure prediction using OpenFold with TensorRT and MMseqs2-GPU, achieving 131x faster inference than AlphaFold2 on specific hardware.

This paper improves metagenomic analysis for food sequencing using AFS-MetaCache2, showing long-read sequencing and the new tool outperform existing methods in accuracy and efficiency.

The paper introduces GPU-accelerated homology search with MMseqs2, achieving faster sequence similarity detection than CPU methods and improving structure prediction speeds.

CUDASW++4.0 improves protein sequence database search speed using GPU-based Smith-Waterman alignment with performance gains over previous methods and CPU tools.