Ian Ferenc Diks

PBMCpedia harmonizes PBMC scRNA-seq data across 24 studies, providing standardized preprocessing, batch correction, and cell type annotation for reproducible immune profiling.

This paper uses VINE-seq to create a vascular transcriptomic atlas in Alzheimer's disease, revealing transcriptional changes in vascular cells and identifying angiopoietin signaling as a key dysregulated pathway.

ROSMAP-Compass harmonizes 22 million single nuclei from the ROSMAP cohort to create an AI-ready resource for Alzheimer's disease research.

SingleRust improves single-cell RNA sequencing analysis by optimizing memory and performance, enabling analysis of 30 million cells on standard infrastructure.

The paper uses single-cell spatial transcriptomics to analyze brain samples from neurodegenerative diseases and COVID-19, identifying disease-specific transcriptional patterns and microenvironmental changes.

The paper constructs a multimodal brain cell atlas of adult macaques across their lifespan, revealing aging-related molecular changes and identifying aging hotspots and regulatory loci.