Author

Marianna Ciuffreda

University of TrentoORCID 0009-0002-6946-0040Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Organism:human· 2 Research Focus:benchmarking· 1 Approach:experimental assay· 1 Organism:mouse· 1 Assay:proteomics· 1 Assay:scRNA-seq· 1 Assay:spatial transcriptomics· 1

Frequent Co-Authors

Toma TebaldiiD· 2 shared Adam PickardiD· 1 shared Ágata Sofia Assunção CarreiraiD· 1 shared Alessandro PilliiD· 1 shared Alessandro ProvenzaniiD· 1 shared Alessio NencioniiD· 1 shared Andrea LunardiiD· 1 shared Charles M. Haughey· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersCancer Biology

Toma TebaldiORCID

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2 papers

Recent·Most cited

NNMT drives innate sensitivity to NAMPT inhibition in YAP-dependent stem-like/ mesenchymal prostate cancer

Ágata Sofia Assunção Carreira, Marianna Ciuffreda, Nathakan Thongon, Charles M. Haughey, Adam Pickard, Sharon L. Eddie, Rebecca E. Steele, Elena Cerri, Romina Belli, Daniele Peroni, Elisa Facen, Irene Caffa, Moustafa S. Ghanem, Alessio Nencioni, Andrea Lunardi, , Alessandro Provenzani

This study identifies the YAP/NNMT axis as a driver of innate sensitivity to NAMPT inhibition in stem-like mesenchymal prostate cancer, suggesting NNMT as a biomarker for NAD+-targeting therapies.

International Journal of Biological Sciences · Jan 1, 2026Peer-reviewedCancer Biology

Cell Marker Accordion: interpretable single-cell and spatial omics annotation in health and disease

Emma Busarello, Giulia Biancon, Ilaria Cimignolo, Fabio Lauria, Zuhairia Ibnat, Christian Ramirez, Gabriele Tomè, Marianna Ciuffreda, Giorgia Bucciarelli, Alessandro Pilli, Stefano Maria Marino, Vittorio Bontempi, Federica Ress, Kristin Roseth Aass, Jennifer VanOudenhove, , Toma Tebaldi

The paper introduces Cell Marker Accordion, a tool for accurate and interpretable single-cell and spatial omics annotation across health and disease contexts.

Nature Communications · Jul 7, 2025Peer-reviewedBioinformatics