Author

Kaniz Fatema

Huntsman Cancer InstituteORCID 0009-0002-8552-2846Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Kaniz Fatema1 paper · World University of Bangladesh

Biology Disciplines

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Cancer Biology· 1 Genetic & Genomic Medicine· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:ATAC-seq· 1 Assay:bulk RNA-seq· 1 Research Focus:cancer & tumor microenvironment· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1

Frequent Co-Authors

Aaron E. AtkinsoniD· 1 shared Adanma AyanambakkamiD· 1 shared Arashdeep SinghiD· 1 shared Bing FengiD· 1 shared Bradley Robert CairnsiD· 1 shared Chris StubbeniD· 1 shared Constance Caparas· 1 shared Courtney CarrolliD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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1 shared paperCancer Biology

Aaron E. AtkinsonORCID

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2 papers

Recent·Most cited

SWI/SNF Alterations Define a Chromatin-Dependent Subtype of Urothelial Carcinoma

Bing Feng, Kaniz Fatema, David Austin Nix, Aaron E. Atkinson, Constance Caparas, Chris Stubben, David Henry Lum, Timothy J. Parnell, Courtney Carroll, G. Daniel Grass, Laura Graham, Eric A. Singer, Kenneth Gerard Nepple, Zarko Manojlovic, ERIC C. KAUFFMAN, , Sumati V. Gupta

This paper identifies a chromatin-altered subtype of urothelial carcinoma defined by SWI/SNF alterations, showing it is sensitive to HDAC inhibition and immunotherapy.

bioRxiv · Aug 6, 2026 · PreprintCancer Biology

Non-coding genetic variants underlying higher prostate cancer risk in men of African ancestry

Shan Li, Kaniz Fatema, Nidharshan Sundarraj, Arashdeep Singh, Padma Sheila Rajagopal, Dimple Notani, David Yoshio Takeda, Sridhar S. Hannenhalli

The paper identifies non-coding SNPs associated with prostate cancer risk in men of African ancestry using a deep learning model and experimental validation.

Nature Communications · Nov 20, 2025Peer-reviewedGenetic & Genomic Medicine