Chinmay K Lalgudi

PhenoMapR maps bulk expression phenotypes to single-cell and spatial transcriptomics data to identify biologically relevant cellular populations and spatial niches.

This study shows that gut microbiome recovery after antibiotics is path-dependent, shaped by ecological and evolutionary dynamics including strain sweeps, genetic changes, and phage activity.

The paper analyzes centromere evolution in lemurs using long-read sequencing, finding rapid sequence turnover and distinct centromeric repeats across species.

This study analyzes global trends in human birth and death seasonality, finding climate-related shifts in reproductive timing due to rising temperatures.

The paper updates the PRECOG resource by adding pediatric and immunotherapy datasets, enabling analysis of gene expression associations with clinical outcomes using statistical models and deconvolution.