Author

Sofia Lundqvist

KTH Royal Institute of TechnologyORCID 0009-0005-2329-5061Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Organism:human· 2 Assay:CRISPR screen· 1 Research Focus:differential expression· 1 Assay:long-read sequencing· 1 Research Focus:protein structure prediction· 1

Frequent Co-Authors

Aaron F. StraightiD· 1 shared Aaron StreetsiD· 1 shared Annie MaslaniD· 1 shared Cy ChittendeniD· 1 shared Denise A. RoblesiD· 1 shared Jacob Price SchwartziD· 1 shared Jasper PanteniD· 1 shared Jeremy MarcusiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperGenomics

Aaron F. StraightORCID

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2 papers

Recent·Most cited

GenomicsbioRxivPreprintJul 10, 2026

Isoform-level resolution in single-cell CRISPR screens reveals hidden functional consequences of gene perturbation

Nathanael Andrews, Josie Gleeson, Jasper Panten…·Tuuli Lappalainen

This paper evaluates isoform-level resolution in single-cell CRISPR screens using long-read sequencing, finding that it captures splicing changes missed by gene-level analysis.

DOI 10.64898/2026.07.09.737410

humanCRISPR screen

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GenomicsbioRxivPreprintMar 11, 2025

DiMeLo-cito: a one-tube protocol for mapping protein-DNA interactions reveals CTCF bookmarking in mitosis

Nathan I. Gamarra, Cy Chittenden, Kousik Sundararajan…·Nicolas Altemose

DiMeLo-cito improves DiMeLo-seq by eliminating wash steps, enabling mitotic protein-DNA interaction analysis in diploid human cells and revealing CTCF bookmarking.

11 citations

humanlong-read sequencing

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