Author

Lili Duan

National Institute for Basic BiologyORCID 0009-0005-2698-1032Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genetics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Assay:ATAC-seq· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Aili JuiD· 2 shared Fei Ye· 1 shared Haicheng Li· 1 shared Honggang Ma· 1 shared Jiachen ZhangiD· 1 shared Jinghan Diao· 1 shared Junhua NiuiD· 1 shared Kensuke Kataoka· 1 shared

Activity by Year

2024-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersBioinformatics

Aili JuORCID

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2 papers

Recent·Most cited

BioinformaticsNucleic Acids ResearchPeer-reviewedNov 12, 2024

Comprehensive genome annotation of the model ciliate Tetrahymena thermophila by in-depth epigenetic and transcriptomic profiling

Fei Ye, Xiao Chen, Yuan Li…·Shan Gao

This study improves gene annotation in Tetrahymena thermophila by integrating transcriptomic and epigenetic data, adding new genes and UTRs while identifying antisense transcripts.

34 citationstop 3%

bulk RNA-seqATAC-seq

𝕏 PostBluesky

GeneticsbioRxivPreprintFeb 6, 2024

Self-regulation of the DNA N6-adenine methyltransferase AMT1 in the unicellular eukaryote Tetrahymena thermophila

Lili Duan, Haicheng Li, Aili Ju…·Yuanyuan Wang

This study identifies a self-regulatory mechanism of the 6mA methyltransferase AMT1 in Tetrahymena thermophila, showing that AMT1 modulates its own transcription through 6mA methylation and affects cell fitness.

2 citations

DNA methylationstatistical model

𝕏 PostBluesky