Author

Simon Zufferey

University of BaselORCID 0009-0005-5483-4566Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:database / resource· 2 Approach:deep learning· 2 Assay:imaging· 2 Research Focus:benchmarking· 1 Organism:C. elegans· 1 Research Focus:cell type annotation· 1 Assay:cryo-EM· 1 Approach:experimental assay· 1

Frequent Co-Authors

Benjamin D. EngeliD· 2 shared Florent WaltziD· 2 shared Lorenz LammiD· 2 shared Wojciech WietrzyñskiiD· 2 shared Abhay KotechaiD· 1 shared Alicia K. MichaeliD· 1 shared Alister BurtiD· 1 shared Antonio Martínez-SáncheziD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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2 shared papersBioinformatics

Benjamin D. EngelORCID

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2 papers

Recent·Most cited

BioinformaticsNature MethodsPeer-reviewedSep 8, 2026

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MemBrain v2: an end-to-end tool for the analysis of membranes in cryo-electron tomography

Lorenz Lamm, Simon Zufferey, Hanyi Zhang…·Tingying Peng

MemBrain v2 couples a generalist U-Net cryo-ET membrane segmenter, a mesh-based picker reaching 91% F1 for photosystem II from one annotated membrane, and geodesic particle statistics.

153 citationstop 1%

multiple speciesimaging

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Cell BiologyMolecular CellPeer-reviewedDec 19, 2025

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Towards community-driven visual proteomics with large-scale cryo-electron tomography of Chlamydomonas reinhardtii

Ron Kelley, Sagar Khavnekar, Ricardo D. Righetto…·Abhay Kotecha

Automated cryogenic plasma-focused ion beam milling and cryo-electron tomography of Chlamydomonas reinhardtii yield 1,829 annotated cellular tomograms and sub-nanometer in situ structures of six macromolecular complexes.

59 citationstop 1%

plant (other)C. elegans

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