Author

Samreen Ahmed

University of MichiganORCID 0009-0005-6573-4034Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Samreen Ahmed1 paper

Biology Disciplines

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Biochemistry· 1 Genetics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Organism:human· 2 Approach:statistical model· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Research Focus:cell signaling & trafficking· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Thomas E. WilsoniD· 3 shared Thomas W. GloveriD· 3 shared Alex Wu· 1 shared Amanda WinninghamiD· 1 shared André NussenzweigiD· 1 shared Archana KrishnamoorthyiD· 1 shared Bjoern SchweriD· 1 shared David S. PellmaniD· 1 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 28 mutual co-author links

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3 shared papersBiochemistry

Thomas E. WilsonORCID

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3 papers

Recent·Most cited

BiochemistrySciencePeer-reviewedJul 2, 2026

A CDK1 phospho-switch reprograms TRAIP to unload replisomes in mitosis

Geylani Can, Maksym Shyian, Archana Krishnamoorthy…·David S. Pellman

The paper identifies a phospho-switch mechanism that reprograms TRAIP to ubiquitylate replisomes in mitosis, enabling disassembly of unreplicated DNA.

13 citationstop 1%

proteomicsexperimental assay

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GenomicsbioRxivPreprintJun 29, 2026

High-fidelity rare structural variant detection with HiFiRE3 reduced representation via restriction enzyme ends

Joseph A Stewart, Jeanmarie Mishler, Samreen Ahmed…·Thomas E. Wilson

HiFiRe3 improves rare structural variant detection by reducing artifacts through error suppression and correction strategies across long and short-read sequencing platforms.

DOI 10.64898/2026.06.24.734375

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GeneticsbioRxivPreprintMay 28, 2024

POLQ mediates replication-stress induced structural variant formation throughout common fragile sites during mitosis

Thomas E. Wilson, Samreen Ahmed, Amanda Winningham, Thomas W. Glover

The paper investigates SV formation at common fragile sites during mitosis and identifies POLQ-mediated end-joining as a key mechanism.

1 citation

humanDNA methylation

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