Tuan Minh Pham

DRIFT improves spatial transcriptomics analysis by integrating spatial context into foundation models using diffusion on spatial graphs, outperforming specialized methods.

kmerRRR improves analysis of repetitive genomic regions by using k-mer frequency analysis to enhance mappability and recover lost biological signals in chromatin and small RNA data.

The paper examines satellite DNA dynamics across multiple insect orders and ground beetle species, revealing significant variation in satDNA abundance and turnover across evolutionary scales.

The paper identifies DEAF1 as a repressor of synaptic genes, showing its role in limiting synaptogenesis and linking it to intellectual disability.