bioRxivGenomicsPreprint
GATA3 mutation disrupts a functional network governed by estrogen receptor, FOXA1 and GATA3
Motoki TakakuiD, Sara A. GrimmiD, Bony De KumariD, Brian D. BennettiD, Paul A. WadeiD
Abstract
Estrogen receptors (ER) are part of the nuclear receptor superfamily of transcription factors and are activated by the steroid hormone 17{beta}-estradiol. ER forms a regulatory network in conjunction with other transcription factors, such as FOXA1 and GATA3. GATA3 has been identified as one of the most frequently mutated genes in breast cancer and is capable of specifying chromatin localization of FOXA1 and ER. How GATA3 mutations impact this transcriptional network is unknown. Here we investigate the function of one of the recurrent patient-derived GATA3 mutations (R330fs) on this regulatory network. Genomic analysis indicates that the R330fs mutant can disrupt the cooperative action of ER, FOXA1, and GATA3, and induce a change in chromatin localization of these factors. Relocalization of ER and FOXA1 is associated with altered chromatin architecture, which leads to differential gene expression in GATA3 mutant cells. These results suggest an active role for GATA3 mutants in ER positive breast tumors.
- organism: human
- assay: DNA methylation
- assay: ChIP-seq
- research focus: gene regulatory network inference
- research focus: differential expression
- research focus: variant effect prediction
- approach: statistical model
- Citations
- 0
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