bioRxivBiochemistryPreprint
Metabolic Quadrivalency in RSeT Human Embryonic Stem Cells
K. G. Chen, K. Park, D. Maric, K. R. Johnson, P. G. Robey, B. S. Mallon
Abstract
One of the most important properties of human embryonic stem cells (hESCs) is related to their pluripotent states. In our recent study, we identified a previously unrecognized pluripotent state induced by RSeT medium. This state makes primed hESCs resistant to conversion to naive pluripotent state. In this study, we have further characterized the metabolic features in these RSeT hESCs, including metabolic gene expression, metabolomic analysis, and various functional assays. The commonly reported metabolic modes include glycolysis or both glycolysis and oxidative phosphorylation (i.e., metabolic bivalency) in pluripotent stem cells. However, besides the presence of metabolic bivalency, RSeT hESCs exhibited a unique metabolome with additional fatty acid oxidation and imbalanced nucleotide metabolism. This metabolic quadrivalency is linked to hESC growth independent of oxygen tension and restricted capacity for naive reprogramming in these cells. Thus, this study provides new insights into pluripotent state transitions and metabolic stress-associated hPSC growth in vitro.
- organism: human
- assay: bulk RNA-seq
- assay: metabolomics
- research focus: cell type annotation
- research focus: metabolism & bioenergetics
- approach: experimental assay
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Resistance to Naive and Formative Pluripotency Conversion in RSeT Human Embryonic Stem Cells
K. G. Chen, K. J. Johnson, … P. G. Robey·bioRxiv·Feb 16, 2024
- Complex I is essential for embryonic stem cell proliferation through NADH-mediated redox signaling
Tatiana Yu. Starkova, Andrey A. Kuzmin, … Sergey A. Sinenko·bioRxiv·Oct 30, 2026
- A critical role for heme synthesis and succinate in the regulation of pluripotent states transitions
Damien Detraux, Marino Caruso, … Patricia Renard·eLifePeer-reviewed·Jul 10, 2023
- Oxidative phosphorylation safeguards pluripotency via UDP-N-acetylglucosamine
- Suspension culture drives metabolic rewiring in human pluripotent stem cells
Astrid Sophie Pejstrup Agger, Eleni Kafkia, … Christian Honoré·bioRxiv·Sep 24, 2026
- Oct4 regulates embryonic pluripotency via metabolic mechanisms and Stat3 signalling.
Giuliano Giuseppe Stirparo, Agata Kurowski, … Jennifer Nichols·Proceedings of the National Academy of SciencesPeer-reviewed·Jan 15, 2021