Author

K. R. Johnson

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cell Biology· 2 Biochemistry· 1 Cancer Biology· 1 Paleontology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 4 Organism:human· 4 Assay:bulk RNA-seq· 2 Research Focus:cell type annotation· 2 Research Focus:gene regulatory network inference· 2 Research Focus:benchmarking· 1 Research Focus:cancer & tumor microenvironment· 1 Research Focus:cell signaling & trafficking· 1

Frequent Co-Authors

A. Bercovici· 1 shared A. J. Fuentes· 1 shared A. R. Black· 1 shared B. S. Mallon· 1 shared C. Guda· 1 shared C. Rao· 1 shared D. E. Frodyma· 1 shared D. Maric· 1 shared

Activity by Year

2019-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 9 mutual co-author links

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1 shared paperPaleontology

A. Bercovici

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Author profile →

5 papers

Recent·Most cited

Triglyceride metabolism controls inflammation and APOE4-associated disease states in microglia

R. A. Stephenson, K. R. Johnson, L. Cheng, L. G. Yang, J. T. Root, J. Gopalakrishnan, H.-Y. Shih, P. S. Narayan

This study shows that triglyceride metabolism is essential for microglial activation and disease states in APOE4 microglia, with implications for modulating immune responses.

bioRxiv · Apr 11, 2024Cell Biology

Metabolic Quadrivalency in RSeT Human Embryonic Stem Cells

K. G. Chen, K. Park, D. Maric, K. R. Johnson, P. G. Robey, B. S. Mallon

This study identifies a unique metabolic state in RSeT human embryonic stem cells characterized by quadrivalency, linking it to growth independence from oxygen and resistance to naive reprogramming.

bioRxiv · Feb 21, 2024 · PreprintBiochemistry

KSR1-and ERK-dependent Translational Regulation of the Epithelial-to-Mesenchymal Transition

C. Rao, D. E. Frodyma, S. Southekal, R. A. Svoboda, A. R. Black, C. Guda, T. Mizutani, H. Clever, K. R. Johnson, K. W. Fisher, R. E. Lewis

This study shows KSR1 and ERK promote EMT by selectively translating EPSTI1, which facilitates the E-to N-cadherin switch and enhances migration and invasion in CRC cells.

bioRxiv · Jan 18, 2021Cancer Biology

Image-based pooled whole genome CRISPR screening for Parkin and TFEB subcellular localization

G. kanfer, S. A. Sarraf, Y. Maman, H. Baldwin, K. R. Johnson, M. E. Ward, M. Kampmann, J. Lippincott-Schwartz, R. J. Youle

The paper introduces AI-Photoswitchable Screening (AI-PS) to identify genes affecting subcellular localization, validating factors involved in TFEB relocation.

bioRxiv · Jul 2, 2020Cell Biology

Constructing a Timescale of Biotic Recovery across the Cretaceous Paleogene Boundary, Corral Bluffs, Denver Basin, Colorado

A. J. Fuentes, W. C. Clyde, K. Weissenburger, A. Bercovici, T. R. Lyson, I. M. Miller, J. Ramenzani, M. D. Schmitz, K. R. Johnson

This study constructs a high-resolution magnetostratigraphy across the K–Pg boundary at Corral Bluffs to better understand biotic recovery dynamics in the Denver Basin.

bioRxiv · May 15, 2019Paleontology