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BioinformaticsJournal of Biotechnology and Biomedicine
Peer-reviewed journal article

cProSite: A web based interactive platform for online proteomics, phosphoproteomics, and genomics data analysis

Dunrui WangiD, Xiaolan QianiD, Yi‐Chieh Nancy DuiD, Beatriz Sánchez‐SolanaiD, Kailing CheniD, Madhu Kanigicherla, Lisa M. Miller JenkinsiD, Jason Luo, Sarah Eng, Brian ParkiD, Ben CheniD, Xiaozheng Yao, Thuong NguyeniD, Brajendra K. TripathiiD, Marian E. DurkiniD, Douglas R. LowyiD

Abstract

We developed cProSite, a website that provides online genomics, proteomics, and phosphoproteomics analysis for the data of The National Cancer Institutes Clinical Proteomic Tumor Analysis Consortium (CPTAC). This tool focuses on comparisons and correlations between different proteins and mRNAs of tumors and normal tissues. Our website is designed with biologists and clinicians in mind, with a user-friendly environment and fast search engine. The search results of cProSite can be used for clinical data validation and provide useful strategic information to identify drug targets at proteomic, phosphoproteomic, or genomic levels. The site is available at http://cprosite.ccr.cancer.gov. SignificanceAn interactive database for the expression and correlation for proteins, proteomic phosphorylations, and mRNA levels has been developed for analyzing the molecular alterations between tumors and normal tissues of various tumor types.

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