bioRxivBiochemistryPreprint
PXL: a Nucleic Acid-Binding Module of Promyelocytic Leukemia Protein
Daniel FairchildiD, Irina V. SemenovaiD, Dane H. Geddes-BuehreiD, Yunfeng LiiD, Renata Szczepaniak, Sandra K. WelleriD, Bing HaoiD, Irina BezsonovaiD
Abstract
The promyelocytic leukemia protein (PML) is a stress-response factor that assembles into PML nuclear bodies, dynamic subnuclear compartments involved in tumor suppression and antiviral defense. The most abundant isoform, PML-1, has been linked to transcriptional regulation, genome stability, and antiviral responses, yet the molecular basis of these functions remains unclear. Here, we report that PML-1 contains a unique nucleic acid- binding module, PXL, and determine its three-dimensional structure by X-ray crystallography. Further biochemical, mutational, and cellular analyses, including RNA-seq, demonstrate that this module selectively binds single-stranded G-rich RNA and DNA motifs and modulates the transcriptome. These findings reveal an unexpected molecular function of PML and provide a framework for understanding its roles in nuclear organization and gene regulation.
- assay: DNA methylation
- assay: bulk RNA-seq
- research focus: transcription & RNA processing
- approach: experimental assay
- Citations
- 0
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- In situ molecular architecture of PML bodies reveals open-state columnar trinucleosome assemblies within a porous, chromatin-permissive interior
Vojtěch Pražák, Iain Harley, … Stephen D. Carter·bioRxiv·Jun 10, 2026
- Effects of arsenic on the topology and solubility of promyelocytic leukemia (PML)-nuclear bodies
S. Hirano, O. Udagawa·bioRxiv·Jan 13, 2021
- Sp100-HMG drives 'inside-out' PML-NB assembly to modulate transcription and cell-cycle dynamics
Hongchang Dong, Xiuyan Guo, … Pei Xu·bioRxiv·Jul 28, 2025
- Genomic profiling of PML bodies reveals transcriptional regulation by PML bodies through the DNMT3A exclusion
M. Kurihara, K. Kato, … Y. Miyanari·bioRxiv·Aug 9, 2019
- Biological differences in promyelocytic leukemia (PML) proteins between PML-nuclear bodies (PML-NBs) and extranuclear PML bodies (EnPBs) in arsenite-exposed cells.
Seishiro Hirano, Osamu Udagawa·bioRxiv·Jan 26, 2026
- Interplay between PML NBs and HIRA for H3.3 dynamics following type I interferon stimulus
Constance Kleijwegt, Florent Bressac, … Armelle Corpet·eLifePeer-reviewed·May 5, 2023